apex22

Crystal Structure Report for apex22


A specimen of C11H10O2S, approximate dimensions 0.30 mm x 0.30 mm x 0.30 mm, was used for the X-ray crystallographic analysis. The X-ray intensity data were measured on a APEXII system equipped with a Graphite monochromator.

The total exposure time was 0.92 hours. The frames were integrated with the Bruker SAINT software package using a narrow-frame algorithm. The integration of the data using an orthorhombic unit cell yielded a total of 5669 reflections to a maximum θ angle of 29.49° (0.72 Å resolution), of which 2541 were independent (average redundancy 2.231, completeness = 94.9%, Rint = 1.73%, Rsig = 2.56%) and 2341 (92.13%) were greater than 2σ(F2). The final cell constants of a = 5.9627(4) Å, b = 9.0425(6) Å, c = 18.3938(12) Å, volume = 991.75(11) Å3, are based upon the refinement of the XYZ-centroids of 2501 reflections above 20 σ(I) with 5.019° < 2θ < 53.48°. Data were corrected for absorption effects using the multi-scan method (SADABS). The ratio of minimum to maximum apparent transmission was 0.903. The calculated minimum and maximum transmission coefficients (based on crystal size) are 0.9169 and 0.9169.

The structure was solved and refined using the Bruker SHELXTL Software Package, using the space group P 21 21 21, with Z = 4 for the formula unit, C11H10O2S. The final anisotropic full-matrix least-squares refinement on F2 with 129 variables converged at R1 = 3.16%, for the observed data and wR2 = 8.16% for all data. The goodness-of-fit was 1.054. The largest peak in the final difference electron density synthesis was 0.217 e-3 and the largest hole was -0.222 e-3 with an RMS deviation of 0.038 e-3. On the basis of the final model, the calculated density was 1.381 g/cm3 and F(000), 432 e-.





Table 1. Sample and crystal data for apex22.
Identification codeapex22
Chemical formulaC11H10O2S
Formula weight206.25
Temperature110(2) K
Wavelength0.71073 Å
Crystal size0.30 x 0.30 x 0.30 mm
Crystal systemorthorhombic
Space groupP 21 21 21
Unit cell dimensionsa = 5.9627(4) Åα = 90°
b = 9.0425(6) Åβ = 90°
c = 18.3938(12) Åγ = 90°
Volume991.75(11) Å3
Z4
Density (calculated)1.381 Mg/cm3
Absorption coefficient0.294 mm-1
F(000)432


Table 2. Data collection and structure refinement for apex22.
DiffractometerAPEXII
Theta range for data collection2.21 to 29.49°
Index ranges-8<=h<=8, -12<=k<=12, -25<=l<=16
Reflections collected5669
Independent reflections2541 [R(int) = 0.0173]
Coverage of independent reflections94.9%
Absorption correctionmulti-scan
Max. and min. transmission0.9169 and 0.9169
Structure solution techniquedirect methods
Structure solution programSHELXS-97 (Sheldrick, 1990)
Refinement methodFull-matrix least-squares on F2
Refinement programSHELXL-97 (Sheldrick, 1997)
Function minimizedΣ w(Fo2 - Fc2)2
Data / restraints / parameters2541 / 0 / 129
Goodness-of-fit on F21.054
Δ/σmax0.001
Final R indices2341 data; I>2σ(I)R1 = 0.0316, wR2 = 0.0780
all dataR1 = 0.0356, wR2 = 0.0816
Weighting schemew=1/[σ2(Fo2)+(0.0452P)2+0.0487P]
where P=(Fo2+2Fc2)/3
Absolute structure parameter-0.0(1)
Largest diff. peak and hole0.217 and -0.222 eÅ-3
R.M.S. deviation from mean0.038 eÅ-3


Table 3. Atomic coordinates and equivalent isotropic atomic displacement parameters (Å2) for apex22.
U(eq) is defined as one third of the trace of the orthogonalized Uij tensor.
x/ay/bz/cU(eq)
S10.69015(7)0.18162(4)0.75959(2)0.03833(11)
O10.1646(2)0.30225(13)0.82299(7)0.0498(3)
O20.6580(2)0.91076(13)0.87073(7)0.0522(3)
C10.6649(3)0.37705(18)0.77103(10)0.0486(4)
C20.8643(3)0.12424(17)0.82787(8)0.0361(3)
C30.0667(3)0.19481(18)0.85009(8)0.0365(3)
C40.1423(3)0.11432(17)0.91751(8)0.0370(3)
C50.3233(3)0.1406(2)0.96184(9)0.0483(4)
C60.3505(4)0.0492(2)0.02239(10)0.0570(5)
C70.8502(4)0.1759(2)0.67730(9)0.0605(5)
C80.2006(4)0.9386(2)0.03751(9)0.0598(5)
C90.0139(4)0.91259(19)0.99253(9)0.0503(5)
C100.9900(3)0.00173(18)0.93198(9)0.0388(4)
C110.8102(3)0.00138(16)0.87472(8)0.0374(3)


Table 4. Bond lengths (Å) for apex22.
S1-C21.7102(15)S1-C11.7860(16)
S1-C71.7901(19)O1-C31.2383(19)
O2-C111.2248(19)C1-H1A0.98
C1-H1B0.98C1-H1C0.98
C2-C31.425(2)C2-C111.443(2)
C3-C41.507(2)C4-C51.373(2)
C4-C101.390(2)C5-C61.396(3)
C5-H50.95C6-C81.370(3)
C6-H60.95C7-H7A0.98
C7-H7B0.98C7-H7C0.98
C8-C91.407(3)C8-H80.95
C9-C101.382(2)C9-H90.95
C10-C111.503(2)


Table 5. Bond angles (°) for apex22.
C2-S1-C1105.36(8)C2-S1-C7106.77(9)
C1-S1-C799.96(10)S1-C1-H1A109.5
S1-C1-H1B109.5H1A-C1-H1B109.5
S1-C1-H1C109.5H1A-C1-H1C109.5
H1B-C1-H1C109.5C3-C2-C11111.27(14)
C3-C2-S1126.09(12)C11-C2-S1122.45(12)
O1-C3-C2129.43(15)O1-C3-C4124.69(15)
C2-C3-C4105.85(14)C5-C4-C10121.76(15)
C5-C4-C3129.82(16)C10-C4-C3108.40(13)
C4-C5-C6117.59(18)C4-C5-H5121.2
C6-C5-H5121.2C8-C6-C5121.19(18)
C8-C6-H6119.4C5-C6-H6119.4
S1-C7-H7A109.5S1-C7-H7B109.5
H7A-C7-H7B109.5S1-C7-H7C109.5
H7A-C7-H7C109.5H7B-C7-H7C109.5
C6-C8-C9121.26(17)C6-C8-H8119.4
C9-C8-H8119.4C10-C9-C8117.28(18)
C10-C9-H9121.4C8-C9-H9121.4
C9-C10-C4120.92(15)C9-C10-C11129.58(16)
C4-C10-C11109.49(13)O2-C11-C2130.17(14)
O2-C11-C10124.88(14)C2-C11-C10104.92(13)


Table 6. Anisotropic atomic displacement parameters (Å2) for apex22.
The anisotropic atomic displacement factor exponent takes the form: -2π2[ h2 a*2 U11 + ... + 2 h k a* b* U12 ]
U11U22U33U23U13U12
S10.0406(2)0.03457(19)0.03979(19)0.00379(15)-0.00839(16)-0.00494(17)
O10.0436(6)0.0488(7)0.0571(7)0.0116(6)-0.0017(6)-0.0099(6)
O20.0592(8)0.0447(7)0.0526(7)0.0092(5)-0.0086(7)-0.0159(6)
C10.0497(9)0.0350(8)0.0611(10)0.0013(7)-0.0129(9)0.0079(8)
C20.0388(8)0.0354(7)0.0341(7)0.0041(6)-0.0041(6)0.0000(6)
C30.0357(8)0.0359(8)0.0378(7)-0.0010(7)0.0023(6)0.0028(7)
C40.0400(8)0.0365(8)0.0345(7)-0.0033(6)-0.0024(6)0.0068(6)
C50.0451(9)0.0523(10)0.0475(9)-0.0048(7)-0.0086(8)0.0051(9)
C60.0658(13)0.0568(11)0.0482(10)-0.0068(8)-0.0233(10)0.0126(10)
C70.0901(15)0.0553(11)0.0361(8)0.0024(8)0.0038(9)0.0047(12)
C80.0917(16)0.0487(10)0.0390(9)0.0003(7)-0.0184(11)0.0135(12)
C90.0726(13)0.0399(9)0.0384(9)0.0044(7)-0.0057(9)0.0003(9)
C100.0507(10)0.0333(8)0.0325(8)-0.0033(6)-0.0038(7)0.0039(7)
C110.0459(8)0.0324(7)0.0340(7)0.0000(5)0.0004(8)0.0001(8)


Table 7. Hydrogen atomic coordinates and isotropic atomic displacement parameters (Å2) for apex22.
x/ay/bz/cU(eq)
H1A0.58530.39810.81650.073
H1B0.58100.41880.73010.073
H1C0.81470.42150.77280.073
H51.42620.21800.95170.058
H61.47530.06401.05370.068
H7A0.99650.22250.68540.091
H7B0.76970.22930.63900.091
H7C0.87200.07280.66250.091
H81.2231-0.12171.07920.072
H90.9086-0.16311.00330.06